PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03422.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 222aa    MW: 24699.4 Da    PI: 9.1477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03422.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08127167954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Sme2.5_03422.1_g00002.1 127 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 167
                              699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14119178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-6141172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDLQDIAHSL ELGFSNSNIE MIPLQPPLHN SNYLMNSPPS NFSFMGNPIE EPTAAVPILS  60
SIDEIIASAH ASGNDYSCLQ RRNSMEAMRE MIFRIAMMQP IHIDPESVKP PKRKNVKISK  120
DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA VHYVKFLKKQ LQSLEQAAVN  180
NRPMVAGVST TMSSPGPMNY NSSSIRACQP HPSMNSSAQM LS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBankAC2154490.0AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence.
GenBankAC2153830.0AC215383.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0104A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339941.11e-140PREDICTED: transcription factor HEC1
TrEMBLM0ZXV91e-140M0ZXV9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000103441e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-44bHLH family protein