PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03403.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 328aa    MW: 36961.9 Da    PI: 5.1812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03403.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12160203654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Sme2.5_03403.1_g00001.1 160 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 203
                              589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15157213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10160203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15161220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-5161208No hitNo description
CDDcd048730.00133254295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELGEEVVLE ELVAPRRESW TTLSDFFPNG NGWTFESPLP FYQNPEFVTL NSSLLGLISP  60
PTTSTTQCNF PSFTSPESYQ FLDSSFTAPP LLDEYNSNRP NMENQEEFVG IIPSDFHGLQ  120
QDLSNNNDDV GNSRLMGISA NVGEKKNKIR KLEGQPSKNL MAERRRRKRL NDRLSMLRSI  180
VPKISKMDRT SILGDAIDYM KELSEKIHTL REDDNVKGEI KDIKFVGNFK ELKPNEALVK  240
KPPKFEVERR SVDTRIEICC GAKPGLLLST MSTLEALGLD VQQCVISCFS DFSLQASCSE  300
AREHRTILSS EDVKQTLFKT AGYGGRCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-73HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-73HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346887.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL19e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0V0I9500.0A0A0V0I950_SOLCH; Putative transcription factor bHLH93-like
STRINGPGSC0003DMT4000269370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-81beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]