PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03374.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 251aa    MW: 27662.7 Da    PI: 6.6754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03374.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000181461821455
                              HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Sme2.5_03374.1_g00001.1 146 EKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 182
                              66778889999999887.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.455132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-8137190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-7138186No hitNo description
SuperFamilySSF474592.75E-10143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFASSRVWPQ GGLSVDEEKF GISPFQEAGN SEDQNLNSVH PTSSTTNFRV PVADVKPELA  60
QLYDYHHHVH DKFQVSSSLQ EKMELATDHF TRPLIHSNWS QQDLPSPASS CITTGLSSHN  120
LLNFSNNKRE HKHQHPDHNS SEVRKEKLGD RITSLHQLVS PFGKTDTASV LSEAIGYIRF  180
LQTQIQALSS PYLGNASGSM GHIPQQSLND SQHKSMDLRS RGLCLVPISC MANIGSDTAA  240
DYWAPALGGG F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356148.11e-154PREDICTED: transcription factor bHLH68-like isoform X2
SwissprotQ8S3D18e-41BH068_ARATH; Transcription factor bHLH68
TrEMBLM1BD811e-148M1BD81_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000425411e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]