PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03271.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 303aa    MW: 32701.8 Da    PI: 5.3593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03271.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10152196554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  Sme2.5_03271.1_g00005.1 152 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 196
                              99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-16145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-11145201No hitNo description
PROSITE profilePS5088816.323147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAANQPEGYA DDFLEQILAI PSYSGLPVAD VGTPSETSFT SASAVSHLSS AAAGGLQQPL  60
FPLGLSLDNG RDDVSDAGAY AVKQERDGIN IGNVYAGLEH LQTHAVRQSM PSVHHVQPFQ  120
GPPTTSTTVT VPHAPSVRPR VRARRGQATD PHSIAERLRR ERISERIKAL QELVPSCNKT  180
DRAAMLDEIL DYVKFLRLQV KVLSMSRLGG ASAVAQLVAD IPLQSVEGDS GESRSNQHIW  240
DKWSNADTER EVAKLMEEDV GAAMQYLQSK SLCIMPISLA ALIYPTQQPD DQSLVKPESA  300
APS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087272.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227682e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLK4CVU80.0K4CVU8_SOLLC; Uncharacterized protein
TrEMBLQ38HT70.0Q38HT7_SOLTU; Putative uncharacterized protein
STRINGSolyc09g083220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.39e-65bHLH family protein