PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03213.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 334aa    MW: 37180.5 Da    PI: 4.9005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03213.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-102572971055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sme2.5_03213.1_g00002.1 257 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 297
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14246313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11256301No hitNo description
PfamPF000105.8E-8257297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEPVLAMSEG EWSSLSGTCS TEEANFMAQL FSTCPNEQPP SSSNIGLPIL WTNHENIGGT  60
SEVSMYSSEV TNSSMYFQPM LLRNNSNSMT MEQSSHVPPA NDIIEEDAIQ FLNKQVTNES  120
MESGENFMPE SVLHGKGLQL GREYDQMLVP EKSEISKKRA RSPADQVQKN KRSVKPKKNM  180
KSSVADDEET GNNNNNNNNV LHRQSSFSCC SEDESNVSSY DLYGLASSDN SKGVSLPNGR  240
SRANRGSATD PQSLYARKRR ERINERLRIL QSLVPNGTKV DISTMLEEAV QYVKFLQLQI  300
KLLSSDDLWM YAPIAYNGMD IGLDLRIGIP NPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-103HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582353.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLM1DD900.0M1DD90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000871430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-52bHLH family protein