PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_03078.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 143aa    MW: 16384.7 Da    PI: 9.3506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_03078.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-191665255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +ykGVr +k +g+WvAe+r p++   r r++lg++ taeeAa+a++aa  +l+g
  Sme2.5_03078.1_g00003.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RDRIWLGSYKTAEEAARAYDAAVVCLRG 65
                             69*****99.*******999854...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.82E-301675No hitNo description
PfamPF008471.1E-121665IPR001471AP2/ERF domain
PROSITE profilePS5103223.0771673IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-221674IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-301674IPR001471AP2/ERF domain
SMARTSM003808.8E-351679IPR001471AP2/ERF domain
PRINTSPR003676.6E-101728IPR001471AP2/ERF domain
PRINTSPR003676.6E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVRAKVSREK KVKRDRYKGV RMRKWGKWVA EVRQPKSRDR IWLGSYKTAE EAARAYDAAV  60
VCLRGPSAMI NFPEDPPLIP RDELLSPSQI QVEASRHARG RVTQQSTAVE CVCFGENNNE  120
ECVSSSEVEL HCHLFTSVTM WSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1716751474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367885.14e-63PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5915e-35ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLM1C4W11e-61M1C4W1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000598852e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-29ERF family protein