PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02990.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 281aa    MW: 30657.4 Da    PI: 9.3403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02990.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.3e-051722101255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Sme2.5_02990.1_g00001.1 172 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 210
                              7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.439160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-11170222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-6170214No hitNo description
Gene3DG3DSA:4.10.280.102.4E-9174217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLKTPSSIEE EREMSDMNAK LLLGTISNTG LHLYPNDNNS NNNLLYSSNT SSISTNRGRF  60
SQIYPTINVS NLNINQPNSC SSLDMNLQPL DLINSTRYGG SFSQTYGLTN HFQHSSSESP  120
VNSSTSTISV FSNVMPEAKR TSNTLETNKG PQNAPKKSRV ESRASCPPFK VRKEKLGDRI  180
AALQQLVAPF GKTDTASVLM EAIGYIKFLQ NQVETLSVPY MKSSRSKASR SLHGGGVEMS  240
SEEMKRDLRS RGLCLVPLTC LTYVTDGGGG VWPPPNFTGG T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-122HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568517.11e-158PREDICTED: transcription factor bHLH110
SwissprotQ9SFZ36e-62BH110_ARATH; Transcription factor bHLH110
TrEMBLM0ZWL21e-152M0ZWL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096031e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.17e-60bHLH family protein