PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02911.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 221aa    MW: 25691.3 Da    PI: 6.7894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02911.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.85.2e-20101265128
                      NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 
                              f+ +P d el+++ L k v+gk+l+   +i  +d+y+ ePw+L     +++k++++F ++ kk+  ++r nr+t+  g W+++ k 
  Sme2.5_02911.1_g00003.1  10 FHASPCDCELIMQ-LLKFVAGKSLPG--FIGFTDVYSKEPWELM---GESSKKTHYFLTQLKKK--DTRFNRTTRgGGSWSQQHKG 87 
                              44469******77.667899999887..7999***********6...34455666666665554..4689997774789******* PP

                      NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              k++l++ ++ ++g k+tL f ++++p+  + +W+m+ey l
  Sme2.5_02911.1_g00003.1  88 KPILDEdEKLVIGYKRTLKFKHKKDPS-LNGRWMMKEYFL 126
                              *****8455569********9888888.79********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.0626150IPR003441NAC domain
PfamPF023658.7E-119125IPR003441NAC domain
SuperFamilySSF1019412.09E-2012149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEIKENNVQF HASPCDCELI MQLLKFVAGK SLPGFIGFTD VYSKEPWELM GESSKKTHYF  60
LTQLKKKDTR FNRTTRGGGS WSQQHKGKPI LDEDEKLVIG YKRTLKFKHK KDPSLNGRWM  120
MKEYFLADSL LRQLKSNETK DFVICAIKKN PRSVIKGNAS EASDDVLEYK SFIDRVLQHM  180
ELETQEPKEE TDIFGGENQE PDWLSLLDFE DHALMQNCLN F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461097.12e-81PREDICTED: uncharacterized protein LOC107784474, partial
TrEMBLA0A1S3ZA514e-80A0A1S3ZA51_TOBAC; uncharacterized protein LOC107784474
STRINGXP_009618980.14e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9815725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-13NAC domain containing protein 41