PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02806.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 330aa    MW: 35828.8 Da    PI: 8.5076
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02806.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.7e-3356112358
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                               v Y+eClkNhAaslG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRr++e
  Sme2.5_02806.1_g00002.1  56 VVIYRECLKNHAASLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRRDPE 112
                              589***************************9999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2757111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.23959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2259109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-2959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-17185254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-28187255IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-25196253IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDLSTNATTT AAAAATSSAI KTPELAETEI PSRIQQPKSF PFSNGVFKHK NHHPVVVIYR  60
ECLKNHAASL GTHAVDGCGE FLPIPAANPA DPTSLKCAAC GCHRNFHRRD PEEPPPIATA  120
ALEYQPHHRH HPPPPRGDHS SPNSSPSPPP ISSAYYPASA PHMLLALSAG FSGEKNPNPN  180
PPTPTPSPAV GNANGRKRFR TKFTPDQKVK MLEFAEKVEW KMQKRDEDLV NNFCNEIGVE  240
KGVLKVWMHN NKNTSGSGKK LDQSSTGHQN GNTNNVVNGF CIVTKNKTHH DNTDSEFHLH  300
HESSMNDNKK GFSSFDANNF VATNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-201972571878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357111.11e-173PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9SEZ13e-63ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A0V0HXL61e-172A0A0V0HXL6_SOLCH; Putative transcription factor HB29-like
TrEMBLM1A9K21e-172M1A9K2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178401e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.19e-59homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]