PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02806.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 332aa    MW: 36547.5 Da    PI: 8.3293
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02806.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1101.3e-3453110359
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                               v Y+eClkNhAaslGghavDGCgEf+ps++++ +++++lkCaACgCHRnFHRre+ee
  Sme2.5_02806.1_g00001.1  53 VVIYRECLKNHAASLGGHAVDGCGEFLPSPTANpSDPTSLKCAACGCHRNFHRREPEE 110
                              589***************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2354110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.9E-2954108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.9E-3156107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08456107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.29E-18181254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-29183255IPR009057Homeodomain-like
TIGRFAMsTIGR015655.6E-25193250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDLTNNTATT TTTTVKTSEP EIETPSQIQK LKPFPSSNGV LKRKNPLQHH PVVVIYRECL  60
KNHAASLGGH AVDGCGEFLP SPTANPSDPT SLKCAACGCH RNFHRREPEE PLVITPPPIA  120
TAVLEYQPHH RHHPPPPPPR GDHSSPNSPS PPPISSAYYP ASAPHMLLAL SAGFSGEKNP  180
NPTSAPVTNS NGRKRFRTKF TPDQKVKMLE FSERVGWKMQ KRDEDLVTNF CNEIGVEKGV  240
LKVWMHNNKN TFGKKSDQPI SGDDDSHHQN GNTNNFNGFC IVSRNNNHNN TDSEFHQQQQ  300
QHESNSDNKK GIIHHLHTSD SVVATNGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201942511875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067108.11e-167zinc-finger homeodomain protein 9-like
SwissprotQ9LHF03e-68ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLM1B0K21e-165M1B0K2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000343681e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-68homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]