PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02756.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 154aa    MW: 17826 Da    PI: 8.4341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02756.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-104383954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  Sme2.5_02756.1_g00007.1 43 ARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEEAIQYVKFL 83
                             699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4473483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-143999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-124091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-124087No hitNo description
PfamPF000101.4E-74383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDQQHYSSCS SKINSKAKKE SKALSSSTKK VMKLSTDPQS VAARERRHRI SDRFKILQSL  60
VPGGSKMDTV TMLEEAIQYV KFLKAQIWFH ETMISFVEDQ NIHLNNMNSM DYQQIQQVPS  120
YNYDNTFQQA GFPFSDGDQF RREETNVSGD AFMY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609302.11e-54PREDICTED: transcription factor bHLH140-like
TrEMBLK4CPZ73e-64K4CPZ7_SOLLC; Uncharacterized protein
STRINGSolyc09g005070.1.18e-64(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.18e-34APRATAXIN-like