PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02737.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 154aa    MW: 18223.8 Da    PI: 9.7523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02737.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-1160111255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +  h  +Er RR+++ + +++L ++lP  +   +++K s  +  ++Av+YIk+L+
  Sme2.5_02737.1_g00005.1  60 KILHRDVERHRRQNMANLYATLISHLPYeS---SKGKRSMRDHMQEAVNYIKHLE 111
                              66799***********************66...********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.38E-756115No hitNo description
SuperFamilySSF474591.96E-1357124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.81158110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-860111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-961125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDCLSEIFSS KKIKDDDQQL IQIPSTPCQP YHQDLATNDL NYKRKRSTSA LIRKNSVQKK  60
ILHRDVERHR RQNMANLYAT LISHLPYESS KGKRSMRDHM QEAVNYIKHL ENNIKELEIK  120
RKELEDLALC SSKEDIRLRC GDFDQRKYFT LKSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754436e-46HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350425.11e-74PREDICTED: transcription factor bHLH118-like
TrEMBLM1APG94e-73M1APG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000272937e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.16e-15bHLH family protein