PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02680.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 466aa    MW: 51338.6 Da    PI: 6.3658
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02680.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-18137186155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a++k++g
  Sme2.5_02680.1_g00003.1 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAALKFRG 186
                              78*******************......55************************998 PP

2AP242.81.3e-13229279155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ ++  grW+A+       g    rk+++lg f+++ eAa+a+++a+ +l+g
  Sme2.5_02680.1_g00003.1 229 SKYRGVTLHR-CGRWEAR---M---GqllGRKYIYLGLFDSEIEAARAYDKAAIELNG 279
                              89******99.7******...5...334337**********99************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.92E-13137196No hitNo description
PfamPF008471.3E-9137186IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-15137195IPR016177DNA-binding domain
PROSITE profilePS5103217.833138194IPR001471AP2/ERF domain
SMARTSM003802.4E-31138200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-17138194IPR001471AP2/ERF domain
PfamPF008479.0E-9229279IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-15229287IPR016177DNA-binding domain
CDDcd000183.14E-23229286No hitNo description
SMARTSM003803.2E-28230293IPR001471AP2/ERF domain
PROSITE profilePS5103215.145230287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-14230288IPR001471AP2/ERF domain
PRINTSPR003674.0E-6231242IPR001471AP2/ERF domain
PRINTSPR003674.0E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MFDLNLSFDD VPEESISVPG EPAPEKLNGF LFNQMENSGT SDSSVVNIET SSTAGDDEHS  60
CSDHRPDGYA FDILKSDKEA GNRGGFVINE LFPSMNGEVG LVLSENSAES SEVRIGKAPQ  120
QRLQARKCRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA  180
ALKFRGLNAD INFEISDYEE DLKQMNNFSK EEFVHLLRRQ STGFSRGTSK YRGVTLHRCG  240
RWEARMGQLL GRKYIYLGLF DSEIEAARAY DKAAIELNGT GAITNFGSSA YEVVLGSDAE  300
IRGDAGTNHN LDLNLSISSS SYAENQHGNT SQNGNIQCQH GSNGLPEHNR EVLTSASTKL  360
RSKPLLHGQH MLTQDPLHFP TFKGSAIEKG LEVDASLKWM GQDENTCDRC PTLPLFSTAA  420
SSGFGNSAIT APSAASHQLH FGNGALSYHH SPSLTNMDLS PHYYRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448861e-106AC244886.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence.
GenBankHG9754491e-106HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-106HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339057.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA99e-95AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB58e-95AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0V0IDL90.0A0A0V0IDL9_SOLCH; Putative ethylene-responsive transcription factor RAP2-7-like
STRINGSolyc10g084340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-91related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]