PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02651.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 142aa    MW: 16014.3 Da    PI: 9.8044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02651.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.1e-07711131055
                      AP2  10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              k++g W  +Ird s+   +++ +lg+f+ta e a  +++a  +++g
  Sme2.5_02651.1_g00008.1  71 KTKGIWGTQIRDGSN---NTQRWLGTFDTAIEVALVYDKASIEIRG 113
                              55677*******543...59*********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.00949121IPR001471AP2/ERF domain
SMARTSM003801.6E-670127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-1372119IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-874120IPR016177DNA-binding domain
CDDcd000183.48E-1674119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRQSKKSQKL LVRKSTNLVG KSFVISPCVV HIYFMDDDVA DSSSDEEDNL QGEKFKEHKR  60
ICKEIIIENG KTKGIWGTQI RDGSNNTQRW LGTFDTAIEV ALVYDKASIE IRGANALTNI  120
LKPPPKEINS VKTIPQLRKT NP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769795.19e-40LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like
TrEMBLA0A097F7I64e-37A0A097F7I6_9SOLA; CRF7
TrEMBLA0A2G3AHW81e-36A0A2G3AHW8_CAPAN; Uncharacterized protein
TrEMBLM1DM952e-37M1DM95_SOLTU; Uncharacterized protein
STRINGSolyc01g014720.1.12e-38(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-14cytokinin response factor 5