PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02649.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 228aa    MW: 24672.9 Da    PI: 9.7926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02649.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-201665255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAaka++ a+++++g
  Sme2.5_02649.1_g00005.1 16 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAAKAYDSAAREFRG 65
                             6********.**********8...557************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-141665IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-321674IPR001471AP2/ERF domain
PROSITE profilePS5103223.921673IPR001471AP2/ERF domain
SMARTSM003806.5E-401679IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-221674IPR016177DNA-binding domain
CDDcd000182.24E-321673No hitNo description
PRINTSPR003671.8E-111728IPR001471AP2/ERF domain
PRINTSPR003671.8E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPKGKMNGI VSKEVHYRGV RKRPWGRYAA EIRDPGKKTR VWLGTFDTAE EAAKAYDSAA  60
REFRGVKAKT NFPLLEPEKE QNCKINNEMM NRSPSQSSTV ESSSRDGLSP AVMVDSSSPL  120
DLSIAAAGGF NHSTVGFKLQ NNNPFRSSQI SAGRFAGAAP AVNHMYYLEA LARAGMINLE  180
KKTVDFLGGG VQSESDSSSV IDFMGVDVKR TAGAGLNLDL NLPPPEKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-221274164ATERF1
3gcc_A3e-221274164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089534.11e-99ethylene-responsive transcription factor 4-like
RefseqXP_015089545.11e-99ethylene-responsive transcription factor 4-like
SwissprotQ404773e-41ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLM1C3874e-98M1C387_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000587517e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.11e-28ethylene response factor 8
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]