PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02490.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 392aa    MW: 43730.9 Da    PI: 7.9327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02490.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH521.2e-16189236355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +ahn+ ErrRRd+iN ++  L++l+P+a      K +Ka++Le++++Y+k+Lq
  Sme2.5_02490.1_g00003.1 189 AAHNQSERRRRDKINGKMKALQKLVPNA-----SKTDKASMLEEVIKYLKQLQ 236
                              79*************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-18183255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-18183253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.77E-17183240No hitNo description
PROSITE profilePS5088818.101186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-14189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSYHTWNFSH QTQEEEENKY PRGHVHNQHN QNQVDPMSNK CEVAELTWEN GQVSMHSLGS  60
NLSNEQTKHT WGKAGDTLES IVHQATFQKQ NHDGQNQADI NREKNASYGG QQTRGVPKRM  120
RSSDSDPQLY GGRRSVEFIS ARASAQDNDI PMVTWPCNED STCHGGSEDK EEEHETKSSN  180
LSKRSRRAAA HNQSERRRRD KINGKMKALQ KLVPNASKTD KASMLEEVIK YLKQLQAQIH  240
LISNARNMEQ QMMMTTLGMQ PHIQMPLLAR MGMCSTAGML NNMTQAPYQS LIGGAPVIYP  300
TSSIPTLCPP FMSPPPFAMA STIPTPPQTA NGNATSPTVT KSAAAPNPSF PLTHPCIAFL  360
PQSTKMEFNN EMAAQYLQQA NQENINIQGQ KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186198RAAAHNQSERRRR
2194199ERRRRD
3195200RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-92HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077955.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-39UNE10_ARATH; Transcription factor UNE10
TrEMBLK4C8D30.0K4C8D3_SOLLC; Uncharacterized protein
STRINGSolyc06g069600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-40bHLH family protein