PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02381.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 237aa    MW: 26916.1 Da    PI: 6.9714
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02381.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-323992255
                  G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             prlrWt++LH+ Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Sme2.5_02381.1_g00010.1 39 PRLRWTHDLHATFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 92
                             8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-313594IPR009057Homeodomain-like
PROSITE profilePS5129410.1743595IPR017930Myb domain
SuperFamilySSF466892.33E-153793IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-243993IPR006447Myb domain, plants
PfamPF002493.3E-74091IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNRLDHFSEN SPSSMKQPTF ENSSNKSSGV RPYVRSKMPR LRWTHDLHAT FVHAVERLGG  60
EDRATPKMVL QLMDVKGLTI SHVKSHLQMY RSMKHEELMQ AIAEAGNVIK RNRMDGPDQT  120
NYPHGNFDHH YYNGHLNSTI TTNFSGLIAS NPTFFPLAPW KLMTEKQMGL EGRSNSACNM  180
FWDFFNGYTT IQDRNIGHEY GSSLSNKQFS IIDVEEEAQD SGSTVNNNDI SLDLTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-184095358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-184095358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-184095358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-184095358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-184095459Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755143e-33HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233787.11e-128myb family transcription factor EFM-like isoform X1
RefseqXP_015065526.11e-128myb family transcription factor EFM-like
TrEMBLA0A1U8G2A11e-103A0A1U8G2A1_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A9A51e-103A0A2G3A9A5_CAPAN; putative two-component response regulator ARR19
STRINGSolyc02g080860.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74502029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-34G2-like family protein