PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02378.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 439aa    MW: 50118.4 Da    PI: 5.9342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02378.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-10152183233
                              XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 
                              +++k+ rr+++NReAAr+sR+RKka++++Le+
  Sme2.5_02378.1_g00001.1 152 RSDKVRRRLAQNREAARKSRLRKKAYVQQLEN 183
                              799***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-7149198No hitNo description
SMARTSM003385.8E-5151211IPR004827Basic-leucine zipper domain
PfamPF001707.5E-7152183IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117153197IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-6155196No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
PfamPF141442.2E-27242316IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKGVVEMACY WQLIIKKLLE YDICTFLTRI IDANFHSKEW YTTDLIFWKS LELCGELCEK  60
TIITRIPKTM NSSTYTQFVA SKRMGICDPI HQIGMWGDFK GSSFPDTLIL EVENCLENEM  120
PIMEKRVHNE IEEPSQVTVG TSNRYEPEAS KRSDKVRRRL AQNREAARKS RLRKKAYVQQ  180
LENSKLRLLQ VEQELERARQ QGLYVGDGLD SSQMGCSGTA NSGIASFEME YSQWVDEQDR  240
QTDDLRNSLN SQTGEIELRI LVEECLNHYF NLFRLKATAA NVDVLYLMSG IWKTSAERFF  300
LWIAGFRPSE LLKVLTPHVE PLTEQQVQEV CNLTQSCQQA EDALSQGMVK LHQILAEAVA  360
AGTLGEGIIL PQMAATIEKL EALVRFVNQA DHLRQETLLQ MSCILTAHQS AQGLLALGEY  420
FKRLRALSSR WASRLSEPS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX825440.0X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305473.10.0TGACG-sequence-specific DNA-binding protein TGA-1A
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLQ436470.0Q43647_SOLTU; Leucine zipper transcription factor
STRINGSolyc04g054320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-135bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]