PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02377.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 168aa    MW: 18906.5 Da    PI: 9.9327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02377.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.5e-162675255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI++ s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Sme2.5_02377.1_g00002.1 26 KFIGVRQRP-SGRWVAEIKETS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 75
                             899******.7******99942...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-312585No hitNo description
Gene3DG3DSA:3.30.730.101.4E-272684IPR001471AP2/ERF domain
PROSITE profilePS5103219.2962683IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-192683IPR016177DNA-binding domain
PfamPF008473.6E-112675IPR001471AP2/ERF domain
SMARTSM003804.3E-322689IPR001471AP2/ERF domain
PRINTSPR003676.5E-72738IPR001471AP2/ERF domain
PRINTSPR003676.5E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDSSKSPSES LNISSKQVTK PNNGKKFIGV RQRPSGRWVA EIKETSQKLR LWLGTFDRAE  60
EAALAYDSAA RLLRGRNAKT NFKNQGVLKP HEENCSLLEK NPRLYQLMKQ AIMKKLAGKS  120
LETEEALVED QESINKEEMY GIQLLGSSKV YSSVIVAPSF SNENSYHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-142482362ATERF1
3gcc_A9e-142482362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345066.14e-85PREDICTED: ethylene-responsive transcription factor CRF3-like
TrEMBLM1CAC88e-84M1CAC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000632641e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11