PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02371.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 388aa    MW: 43888.6 Da    PI: 7.8089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02371.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-2196145255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a+++++g
  Sme2.5_02371.1_g00003.1  96 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDEAALRFRG 145
                              7********.**********76....35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.50196153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3396154IPR001471AP2/ERF domain
PfamPF008475.9E-1496145IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2396154IPR016177DNA-binding domain
SMARTSM003806.6E-3896159IPR001471AP2/ERF domain
PRINTSPR003675.9E-1297108IPR001471AP2/ERF domain
CDDcd000185.42E-29104155No hitNo description
PRINTSPR003675.9E-12119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFGGNINREE EMSVMVSALT HVVAGNQNVS SILGEKRGRD ESSHATNTSH ISGGEDTSIR  60
TITSNRPTTE ATFVYTTSTN YEYDHQNSGT NQPRRRYRGV RQRPWGKWAA EIRDPYKAAR  120
VWLGTFDTAE DAARAYDEAA LRFRGSKAKL NFPENVRLLH SSIQHPTNTL YSLSSSPEPI  180
VHTSSPLYRS NFITRHSSRD EEPIVHTSSS MDSSNLITRH SSRHEDPIVH TSSMDRSNFV  240
TRHSSRDKEP IVHTSLNRSN FITGHSSRDE DVSSLYHSNF ITGHSSRDEE RMAHASSLYR  300
SNIITGHSSR DEESIVHASS MYHSNFRGHH SRDEKPIVHT SSSLYRSNFI ERASRNDPGV  360
QQGEYFPYFH EAAKSNWSNY DHPSSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2595156163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754438e-72HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357342.11e-126PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLM1BQQ21e-125M1BQQ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000507181e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-29ERF family protein