PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02282.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 228aa    MW: 26179.6 Da    PI: 6.1608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02282.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-123177454
                             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             ++ + Er+RR+++N++++ Lr ++P+       kK++ a+i + A++YI +L
  Sme2.5_02282.1_g00013.1 31 KNIMSERNRRKKLNERLFALRAVVPNiT-----KKMDRASIIKDAIDYIEEL 77
                             56788*********************55.....99**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8092777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-172992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-113082No hitNo description
PfamPF000103.2E-103177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-153392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-133383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLFQSESYLD EPIWSYYDSS SPDGACAQSS KNIMSERNRR KKLNERLFAL RAVVPNITKK  60
MDRASIIKDA IDYIEELHKQ ERRIRTEISD LEFGRSKKNT HFELDEDESC LDLKHKRSRT  120
LEQQYGYDSS GSTTTSFNSP LELRVSSMGE KIVAVSLTCS KRRDTMLKLC EVFESLNIKI  180
ISANIYAFSG RLHKTAFIEA DEEERDVLKL RIETAIASLN DPDSPMSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259718.11e-111PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV94e-69BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A314LD781e-110A0A314LD78_NICAT; Transcription factor bhlh35
STRINGXP_009760780.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-69bHLH family protein