PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02266.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 342aa    MW: 37388 Da    PI: 6.6744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02266.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13100150255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h  +Er+RR+++N+ ++ Lr+l+P     ++k+ + a+i   +v+YI++Lq
  Sme2.5_02266.1_g00009.1 100 RISHITVERNRRKQMNEHLSVLRTLMPCF---YAKRGDQASIIGGVVDYINELQ 150
                              889*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.13E-1397154No hitNo description
PROSITE profilePS5088814.998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1799167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13100161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11100150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDGDQILSNL FEDSECDILS ILEALEGEGS ANSELNNNNS NNNNQSITMT TSEEGKKRKL  60
VSQKSTGSSA TSGQELYCEE ADTPSSKRQN STATAGVENR ISHITVERNR RKQMNEHLSV  120
LRTLMPCFYA KRGDQASIIG GVVDYINELQ QVLQSLEAKK QRKVYSEVLS PRVLPQLVPI  180
SPRLITPSPL SPRKPPLSPR MNLPISPRTP QPTSPYKPNN NNNNNNNNNA NRLLEPSPTT  240
TSSNSSIDSH VNNELAANSK SAIADVEVKF SGANVILKTV SPRIPGQAVK IIAALEQLSL  300
EILHVSISTI DGTMLNSFTI KIGIECQLSA EELAHQIQQT FC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-106HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankHG9754421e-106HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350638.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-99SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLM1AIH00.0M1AIH0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73572231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.17e-94bHLH family protein