PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02248.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 164aa    MW: 18208.4 Da    PI: 5.2552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02248.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-201263156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f tae+Aa+a++ a++ l+g+
  Sme2.5_02248.1_g00002.1 12 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAEMAAAAYDSAALHLRGH 63
                             68*****999.**********8...557**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-221271IPR016177DNA-binding domain
PROSITE profilePS5103223.0371370IPR001471AP2/ERF domain
SMARTSM003809.2E-371376IPR001471AP2/ERF domain
PRINTSPR003671.1E-101425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-331471IPR001471AP2/ERF domain
CDDcd000182.66E-221472No hitNo description
PfamPF008473.3E-131463IPR001471AP2/ERF domain
PRINTSPR003671.1E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEEGKRSGGI TSPYRGVRKR KWGKWVSEIR EPGKKTRIWL GSFETAEMAA AAYDSAALHL  60
RGHAAKLNFP ELVDHLPKPA SSSPEDIRLA AQEAALRVNT ANFIASTSHD HNVNVAPITI  120
GLSPSQIQAI NDFPMDSPTM WATQDTTFTC EMSDYEEMDD CLWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181474667ATERF1
3gcc_A2e-181474667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571655.15e-90PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I22e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2G3CM245e-89A0A2G3CM24_CAPCH; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000459331e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.12e-46ERF family protein