PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02242.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 728aa    MW: 77883.7 Da    PI: 7.4535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02242.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.6e-16451497455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Sme2.5_02242.1_g00002.1 451 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 497
                              6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-17443501No hitNo description
SuperFamilySSF474591.96E-20444508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-20444505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13451497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MARGKLESGQ QKISSTTNLS SFPENDLVEL KWQNGQIVMQ GQSSSAKKSP VDNNLPSSAS  60
GDRDKFTGNS STSKIGKFGL MDTMLNDMSL SVPTGELDLI QEDEGVPWLG YSADDSLQQD  120
YCSQLLPEIS GVTANKQSGQ SVFGLINKRG SSDKMIGDSH SVPVHNAASL EQRNTSKVSP  180
SSRFSLLSSL ASQKGHASVP TLESGVADTF SSKKSNTPMS VLGDSSQNQA SAGDVKSDKS  240
QKQNMPGNRS NLLNFSHFSR PATFVKAAKL QNITGGSNVS GSSVLEAKGK KGGEKVDNHV  300
SAAAAENYLP SKKENVLHYP TNAVSSQLES RPSGASFHDR SGQVEQSDNA FRDCSSNNDN  360
HRDQFTGAKA IRDIADGERN VDHGVACSSV CSGSSAERGS SDQPLNLKRK NRDNEESECR  420
SEDVEEESVG IKKTCAARGG TGSKRSRAAE VHNLSERRRR DRINEKMRAL QELIPNCNKA  480
DKASMLDEAI EYLKTLQLQV QIMSMGAGFC VPPMMFPTGV QHMHGAQMPH YSPMSLGIGM  540
GMGMGFGMGM LEMNGRSSGY PIFPMPSVQG GHFPSPPIPA STAYPGIAVS NRHAFAHPGQ  600
GLPMSVPRAS LVPLAGQLST GATVPPNVAR AGVPVEIQSA PPIMDSKNPV HKNSRIVHNV  660
EPSLPQNHTC NQVQATNEVL DRSALKNDQL PDVTDCAANN LTNPTNVPGN ETGEFVLENN  720
NFIRYANK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455460ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358519.10.0PREDICTED: transcription factor PIF3-like
RefseqXP_015169448.10.0PREDICTED: transcription factor PIF3-like
TrEMBLM1BK410.0M1BK41_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000470780.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-41phytochrome interacting factor 3