PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02187.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 200aa    MW: 22411.4 Da    PI: 9.1476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02187.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-112270655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55
                             + +E++RR+++++ + +L +l+ ++   ++ K  ls  + Le+A +YIk+Lq
  Sme2.5_02187.1_g00009.1 22 KTIEKNRRNQMKDLYMKLNSLVHHD---QHSKvfLSLPDQLEEAANYIKKLQ 70
                             789*********************8...555559*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.73E-51374No hitNo description
PROSITE profilePS508889.611669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-72086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-72270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-92289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEQQYPCNKP SSSSSCRAAD RKTIEKNRRN QMKDLYMKLN SLVHHDQHSK VFLSLPDQLE  60
EAANYIKKLQ IDLEKMRMRK QSLTEACGSQ NSNLSNTTNG RTLERTWPLP HIEIRSVNSA  120
LDVLLITGSD NQFTFPHVIR MLHEDGVQVI NASYTLVGDT FFHSIHAKVG ESATSSSSGY  180
GTAARIISEK LKQFVAAAAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-52HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347029.11e-117PREDICTED: uncharacterized protein LOC102588456
TrEMBLA0A3Q7F4E71e-100A0A3Q7F4E7_SOLLC; Uncharacterized protein
STRINGSolyc02g078130.2.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-36bHLH family protein