PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02100.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 278aa    MW: 30549.4 Da    PI: 6.7898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02100.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-173785355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Sme2.5_02100.1_g00003.1 37 FRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 85
                             8****999.**********954...5999*******************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9043693IPR001471AP2/ERF domain
PfamPF008473.7E-113681IPR001471AP2/ERF domain
CDDcd000184.14E-203695No hitNo description
SMARTSM003804.4E-363699IPR001471AP2/ERF domain
PRINTSPR003677.8E-103748IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-203793IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-293793IPR001471AP2/ERF domain
PRINTSPR003677.8E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNSSSAGVEE NPNTSEDNKR GGKGKGKGGP DNNKFRFRGV RQRSWGKWVA EIREPRKRTR  60
RWLGTFATAE DAARAYDRAA IILYGSKAQL NLQPSGANTS TSSSSTSSSR RGSTSSSTAQ  120
TLRPLLPRPP SGFDLSFSSS TVLPPNVLAA PNNYAPYGFY PYAADMSQQL IQNPYENNGY  180
LEGDTTKQSE MIWSASNPNP NPRQQQEDQH QLQYHNNCFY DNNLSVCSTQ MVDAAPVVSD  240
PVAAVGGTGS PVLWPIGDDN YHTADIWDYG NDLFLFDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-163792359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168367.15e-87PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLM1DPJ61e-92M1DPJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000923122e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-28ERF family protein