PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02073.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 438aa    MW: 48380.6 Da    PI: 5.69
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02073.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13266312455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  Sme2.5_02073.1_g00002.1 266 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 312
                              799***********************6.....4*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-5216201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.218262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-18264322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-14265315No hitNo description
PfamPF000101.1E-10266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16266322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MALPPPADIN QPPLDLQQML QYVVKSQPEW WAYAIFWQTS TDDEGKNFLA WGDGYFQGGG  60
VANNNKTGGT SSSLEAQAQS ERKNVIKGIQ ALMDGNGDTT TLLDDADVTD TEWFYVMSLA  120
RSFSAGDGSV TGKAFSRGDF LWIAGAAEFQ IYYSCERAKE AQIHGIQTLV CIPISNGVLE  180
LASTDLIKQN LSLVQQVKSM FLCSPPIQFL QETICFADIG LVTGLQQDRN DAKLGENSKK  240
QQPIVAKKRG RKPKGREDDT NMAALNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL  300
LSDAVSYINQ LKARVDELES QIIDPASNKK LKITAESTSA DNQSTTTSSE EQVIRANAPA  360
EIEVKIVGTD AMIRVQSENV DYPSAKFMTA LQHLQIQVHH ASISSVNNLV LHDVVVKLPQ  420
GLNTEDELRT ALLARLKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-33112011192Transcription factor MYC3
4rqw_B4e-33112011192Transcription factor MYC3
4rs9_A4e-33112011192Transcription factor MYC3
4yz6_A4e-33112011192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357552.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM1BKB30.0M1BKB3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000472200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-82bHLH family protein