PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02014.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 202aa    MW: 22846.7 Da    PI: 9.6545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02014.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17114164255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr ++ +g+++AeIrdps   k  r++lg+f+t  +Aa+a++ a+ k++g
  Sme2.5_02014.1_g00008.1 114 NYRGVRKRP-WGKFAAEIRDPSR--KGSRIWLGTFDTDMDAARAYDCAAFKMRG 164
                              59*******.**********854..34**********88*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-31113172No hitNo description
Gene3DG3DSA:3.30.730.106.9E-32114173IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22114173IPR016177DNA-binding domain
PfamPF008472.7E-12114164IPR001471AP2/ERF domain
SMARTSM003801.7E-36114178IPR001471AP2/ERF domain
PROSITE profilePS5103224.5114172IPR001471AP2/ERF domain
PRINTSPR003674.8E-13115126IPR001471AP2/ERF domain
PRINTSPR003674.8E-13154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARQDEGLTL ELIRKHLLED FTTTESFINS LNSCFSDDIS PVFTSVKTEP STSNSLSDSP  60
NSSYPNEPNS PISRYFNLHS DFPEFKIDSD TIFTQVSDGS AESNESDKKN KKKNYRGVRK  120
RPWGKFAAEI RDPSRKGSRI WLGTFDTDMD AARAYDCAAF KMRGRKAILN FPLDAGKAGA  180
PANIGRKRRR ENKMELMKML NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28111173264ATERF1
3gcc_A1e-28111173264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107121KKNKKKNYRGVRKRP
2185189RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1923700.0AY192370.1 Lycopersicon esculentum ethylene response factor 4 (ERF4) mRNA, complete cds.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365343.11e-127PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLM1BB761e-126M1BB76_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000413281e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-45ERF family protein