PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01956.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 533aa    MW: 58967.3 Da    PI: 7.4635
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01956.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.31.9e-08198247855
                      AP2   8 wdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Sme2.5_01956.1_g00002.1 198 RHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 247
                              799***********66667777755555********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.344185255IPR001471AP2/ERF domain
SMARTSM003809.6E-11198261IPR001471AP2/ERF domain
PfamPF008471.3E-4198247IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-10198256IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-9198256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MASPTAKTEG DVGGGETSEH IGTDQLLLYR GLKKAKKERG YTAKERISKM PPCTAGKRSS  60
IYRGVTRYDM EIADCSDVLV SSFLLPDFFY GGIAIKPTPS SLLYLLPPHG SSCADQSSPD  120
SSYICACVDV CELLLFSNIF FSAMSLGHSK ATYISESKGF AIWVELVAPG LPSAGYLSYA  180
VCEQLYRSGG FTLYAPKRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDE EEAAARAYDL  240
AALKYWGPGT LINFPVTDYT RDLEEMQNLS REDYLASLRR KSGGFSRGIS KYRSLSSRWD  300
LQFSRVPGAD YFNSLHYGDN ATVDNEYIGG FCMDRKIDLS SYIKWWGGNK ARQTDSQPKM  360
SEETKVGCPE DIDNELRASE LSVQQTEPYE MPRLGGVYQE KKNHKSSTSA MSILSQSAAY  420
KSLLEKVAKK KEKVETDENE NKSTINTVDR GKMIEKSSPD SGSEGLGAAF INAGGLSINR  480
NLHPLTPLLS APLLTNYNSI DPLTDPNLWT SLVPNFHTGS SRTAEVGLSL IKA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356906.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-113AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2G3D2M50.0A0A2G3D2M5_CAPCH; AP2-like ethylene-responsive transcription factor
STRINGSolyc02g030210.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.14e-97AP2 family protein