PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01944.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 236aa    MW: 26654.9 Da    PI: 4.9894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01944.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-133680554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             + + Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI +L
  Sme2.5_01944.1_g00011.1 36 NIMSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIEEL 80
                             5678*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-173195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1963180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-113485No hitNo description
PfamPF000101.0E-103680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-163796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-143786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.8E-5158222No hitNo description
PROSITE profilePS516718.619162236IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFLQSEELDS YFDEPISSYY DSSSPDGAQS SMASKNIMSE RNRRKKLNER LFALRAVVPN  60
ISKMDKASII KDAIEYIEEL HKQERRIRGE ISELESGRSK KSSSDLELDH DESFDSKPKR  120
SRRFEQQYGY DSSGSTTRSP PSFSPVDVLE LRVSSMGEKT VVVSLTCSKR TDTMVKVCEV  180
FESLNIKIIS ANITALSGRL LKTAFIEADE EERDLLKLRI ETAIASLNDP DSPMSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536455e-75AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankHG9754465e-75HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755195e-75HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603228.11e-140PREDICTED: transcription factor bHLH35-like isoform X2
RefseqXP_016449593.11e-140PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV93e-80BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3YC571e-139A0A1S3YC57_TOBAC; transcription factor bHLH35-like isoform X2
STRINGPGSC0003DMT4000104631e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-73bHLH family protein