PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01898.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 207aa    MW: 22992.8 Da    PI: 9.7466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01898.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-151965255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr  + +gr+ A Ir       r +++lg+f+t+e+Aa+ ++ a++k++g
  Sme2.5_01898.1_g00011.1 19 HYRGVRKQP-SGRYGAAIRI------RSYVWLGTFDTPEQAARVYDMAARKYHG 65
                             6********.7*********......8**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.4131973IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-211974IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-161974IPR016177DNA-binding domain
PfamPF008471.5E-81965IPR001471AP2/ERF domain
SMARTSM003805.0E-251979IPR001471AP2/ERF domain
CDDcd000181.11E-231973No hitNo description
PRINTSPR003677.6E-72031IPR001471AP2/ERF domain
PRINTSPR003677.6E-73955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSKKKNGNAA AVAPPNEVHY RGVRKQPSGR YGAAIRIRSY VWLGTFDTPE QAARVYDMAA  60
RKYHGRKAKT NFPLKNEDNL KNANYLNVNN PNKRSDFGSS FRSRDGLVLY QNPLLTCFPT  120
FNSNNFVPLQ FVLKEYYSEI LKRGEVISCG PKPTNYIQKE MTGDFNGGSG SGSDNNNGAG  180
CEVHDQPPTT NHLELNLDLT LAPPGTM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-23erf domain protein 9