PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01808.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 522aa    MW: 57238.6 Da    PI: 5.7813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01808.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09343391355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_01808.1_g00003.1 343 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 391
                              58*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.67E-11338395No hitNo description
SuperFamilySSF474595.23E-17338409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.497340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17341407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6343391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-10346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MGSKNDTEQQ KRNKDAVNFQ SPNMSMNWQL SGNNLTNLSM VMIPNSNPLV DSNFPPIWDR  60
PTTLPPLSFY GNSAQINPCT MNQHQTATIG SDPARGGMNW NPPNAMLKGA MLVPPIPGTI  120
PQSLAQLPAD SGFIERAARF SCFSGGNFSD IMNSFSVPEY SKPCNRAPTP TWRTEEVFAS  180
NELNSPSIVG SRKQNMQSGV NNSSKDVSLP NENRANEQSP LMNQKKNEGK ESVGLSGNES  240
DEAECSGRQE EMGSTGLESF AKDLGSRKRK GYGQDTELDR MKGAQQLPAK PEEEQTETQK  300
GDVSLNSPSS KHGGKNSKQK SQSSDPPKEE YIHVRARRGQ ATNSHSLAER VRREKISERM  360
KFLQDLVPGC DKVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF NLDGLLGKDS  420
QAGPSSSLTF PPDNMTMTYT SLHGWQSGML QPGFPGDVDA FRRSINSQFT SMSGGYRDPS  480
SQAPNVWDAQ LHNVVDMGFN STAPLDSQDL SSVPPDQMKA EP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-164HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367876.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_006367877.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_015161226.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_015161227.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A0V0IT850.0A0A0V0IT85_SOLCH; Putative transcription factor bHLH49-like
STRINGPGSC0003DMT4000227040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-92bHLH family protein