PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01764.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 387aa    MW: 42828.9 Da    PI: 6.3787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01764.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08298338954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Sme2.5_01764.1_g00004.1 298 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 338
                              69******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14294351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5298338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-4311343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MENLDWNEIN FGASFDPIHV ISNWNMPQRQ EAASRLAADS MAAKSGADLT RDCSEIGFSS  60
SPIFNMPNNY ISDNNPTGLI SDFGVQVVKP ATGLLSNTVS LESIDCLLSA TTTNNTDTSV  120
EDDGMSVIFA DSNSLWNSGE SAAGNINAPG YQQLLSCQLP TEHKVFEEQK HRKRKLYELD  180
EAISQSSLGN SSNEFNLINS TGDCGNFQLI SGKQSKYKKA RLSENTKNRP SSSNINFQQA  240
SSSVSSIDQE PDPEAIAQMK EMIYRAAAFR PVDFGSEVVE KPKRKNVKIS TDPQTVAARQ  300
RRERISERIR VLQRLVPGGS KMDTASMLDE AANYLKFLRS QVKALEAIGQ KQDPLNSITV  360
PFNYQIPMQL PHFPLQKPNQ NTHRPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384470.0AC238447.1 Solanum lycopersicum chromosome 3 clone C03HBa0079K08, complete sequence.
GenBankAC2384650.0AC238465.1 Solanum lycopersicum chromosome 3 clone C03HBa0241F16, complete sequence.
GenBankEU1247300.0EU124730.2 Solanum lycopersicum chromosome 3 clone C03HBa0001E24, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343023.10.0PREDICTED: transcription factor bHLH87
RefseqXP_006343024.10.0PREDICTED: transcription factor bHLH87
TrEMBLM0ZRC90.0M0ZRC9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000064530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-67bHLH family protein