PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01734.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 301aa    MW: 33866.1 Da    PI: 6.6769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01734.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284.1e-09149196455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sme2.5_01734.1_g00001.1 149 SHSLAERARREKISKKMKCLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 196
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.26E-8143200No hitNo description
SuperFamilySSF474599.42E-17143213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.237145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-18145214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-7149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MLQMSVLERQ RAVLERLYSH SKQQQLSSLP QQHLTNLITG GVEGNFNNFN MFDTNNNCQQ  60
MAFSTVSNSS ITTVSPPPEK ESDLTTIIAP TENVVSTKKR KAEFSEEEDC EKSQRGTTGN  120
DSKENSKTSE VQKPDYIHVR ARRGQATDSH SLAERARREK ISKKMKCLQD LVPGCNKVTG  180
KAGMLDEIIN YVQSLQKQVE FLSMKLATLN PRLELNTDNF FTKDFPSYTF PTTVALPTLS  240
EYNMIQHQQG STADVAQMLP QRRDLMAFPD AYLGSSPLTV VQQQQPPFEP DLQSLFSVGF  300
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-103HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346952.11e-180PREDICTED: transcription factor HBI1
TrEMBLM1B9611e-179M1B961_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000400211e-179(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.19e-58BR enhanced expression 2