PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01725.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 267aa    MW: 30278.3 Da    PI: 6.5644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01725.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-1286133355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h ++Er+RR+r  + f  L + +P+      kKl+Ka+iLe A++YI +Lq
  Sme2.5_01725.1_g00004.1  86 QDHLMAERKRRERFSQLFVLLAKSIPQI-----KKLDKATILEDAIKYIGELQ 133
                              67999**********************7.....7****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.23483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1086133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1487148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1588148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-1188136No hitNo description
SMARTSM003533.7E-1389138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFTSFPNQNP TTSNSLENIP KIVFSCSSPS SNSSSSSHNI ISFGNNNVLE DDELDYDMIT  60
EKVMSSTISN SSVAAKRVCR SPLQSQDHLM AERKRRERFS QLFVLLAKSI PQIKKLDKAT  120
ILEDAIKYIG ELQERVTALE EAAGTIKTST NWIESTAAQV HKQYSHDDDD LEYSKRHDHE  180
NIDDIKVQIL DKNVLIGIHC NKQMRNIFSI IAGVMEKLHL TIHHIRVTPS NHISLHHISI  240
LAEIDHENIV DIKVQDVQKA FELHLKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-91HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
GenBankHG9754451e-91HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078512.11e-135PREDICTED: transcription factor bHLH18-like
TrEMBLK4C7881e-135K4C788_SOLLC; Uncharacterized protein
STRINGSolyc06g064580.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-22bHLH family protein