PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01725.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 272aa    MW: 30403.2 Da    PI: 4.6888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01725.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12110157355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + h ++Er+RR+++ + f  L +++P +     kKl+K++iL  ++eY+k+Lq
  Sme2.5_01725.1_g00003.1 110 QDHVIAERKRREKLGDLFISLSKIVPGL-----KKLDKSSILGDTIEYMKELQ 157
                              6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10110157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16111175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16112176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11112161No hitNo description
SMARTSM003531.2E-13113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEYTDNFNYE DECFYELKPN ISQDIYLSTQ SGGYNTNIEE KSGQIKAISP PLISSNNSSS  60
SSGGFVISFS SNQEEDIGAM ISSENACQES LLGGNYNNNV MYKRSPVQAQ DHVIAERKRR  120
EKLGDLFISL SKIVPGLKKL DKSSILGDTI EYMKELQEQV KLLEESKKNM SSSLEHNNSG  180
KEQVAGSNNI KVRILDKSVL INIHCNKQDG IVGRVLVQME QLHLSVDDIR IMPFGPSNLE  240
ISIHAQMEDE CSIHVEDIVK AIQINILDLI NN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRE
2116121RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755182e-99HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322787.11e-142PREDICTED: transcription factor bHLH18-like
TrEMBLK4C7891e-142K4C789_SOLLC; Uncharacterized protein
STRINGSolyc06g064590.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-26bHLH family protein