PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01618.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 283aa    MW: 33032.9 Da    PI: 6.8953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01618.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08174214954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sme2.5_01618.1_g00007.1 174 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 214
                              699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-10171219No hitNo description
Gene3DG3DSA:4.10.280.105.0E-13171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-14174238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6175214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDINHIKLTT STWEPTMSNM DEHVFRDHQQ QQQQRPCLSS IPNDHVFHNH HHHQQQQRRQ  60
FHFQHNPIWP IFPLQNPQHH HLPSSSNQLQ QQQQQQEVPF DHVLNNHVQT LIEDHTDQEH  120
DQDEHEEEEE ELGAMKEMMF KIASMQPVDI DPSTIRKPKR RNVRISNDPQ SVAARLRRER  180
ISEKIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRQ LQSSNHHLLP AQVPISPCPN  240
NENWATKALI LGSSSTTTTT MVNNVTTFVG NTSTDPTYEV IGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549963.11e-125PREDICTED: transcription factor HEC3-like
TrEMBLA0A0V0HMN21e-142A0A0V0HMN2_SOLCH; Putative transcription factor HEC3-like
STRINGPGSC0003DMT4000737601e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-44bHLH family protein