PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01601.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 297aa    MW: 34275.4 Da    PI: 7.0586
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01601.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.91.7e-261983255
                  G2-like  2 prlrWtpeLHerFveaveqLGGse...........kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             prlrWtp+LH++Fv+a+e+LGG++           +AtPk +l++m+v gLt++hvkSHLQ+YR+
  Sme2.5_01601.1_g00006.1 19 PRLRWTPDLHHCFVHAIEKLGGQDilnpffgnicvEATPKLVLQMMDVRGLTISHVKSHLQMYRS 83
                             8*********************98666666666667****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-291586IPR009057Homeodomain-like
SuperFamilySSF466891.97E-121785IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-181984IPR006447Myb domain, plants
PfamPF002496.6E-82082IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDILNPFFGN ICVEATPKLV  60
LQMMDVRGLT ISHVKSHLQM YRSMKSDVNK QERMGIQPRK QQSLEDLDCH YQQQEQEEGC  120
VVEQQKLLVY QYPSFSSNHN MEISDCTPYF NSVQPTKRAR IERCSSQRKL EAVTNQYNSR  180
NDYIHSIMAE KNEIQESQFL KVLKTQDSSN RFKFEGLRKT ENVREEEEED EDEHGLSLSL  240
SLHHHPSTQR SNASSIISEI SETISSSSGG SNLNHHQYHW LSLSEKQNVN LNLSIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-142085458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-61HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-61HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072961.11e-149putative Myb family transcription factor At1g14600
TrEMBLM1CVL11e-144M1CVL1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000756681e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54332238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.15e-31G2-like family protein