PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01505.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 296aa    MW: 33716.1 Da    PI: 6.8391
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01505.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1142e-35221262100
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++                      
  Sme2.5_01505.1_g00003.1  22 TGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpnqvpsstteaeadaavl 107
                              79**************************************************************8888755544433332222222 PP

                      TCP  66 ssssasec.eaesssssasnsssgkaaksaakskks 100
                              ++ ++ +   + ++                 +++++
  Sme2.5_01505.1_g00003.1 108 EQRPEYQLqRELEE-----------------NNQSQ 126
                              11111111111111.................11111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3222132IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9642482IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKRATGGGEI VQVEGGHILR STGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLDELPPWNP NQVPSSTTEA EADAAVLEQR PEYQLQRELE  120
ENNQSQVNSS NSYMMQGGEP PQSLGDTMKS FFPMNSGTSL INFHNYPHEI MSRSSLQNED  180
LGLSLHTTFH RASASNDDHS TLFSNQNFEA NYPRMASWNM FPQTFFTPRE PLQSNYSHLI  240
NHHANWEERP LMNGLIHQAE ISNNSRHFTT DFQVPARIHG EHHEDPSSAS PNAHHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-124HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
GenBankHG9754461e-124HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankGQ4963281e-124GQ496328.1 Solanum lycopersicum TCP transcription factor 10 (TCP10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580868.10.0PREDICTED: transcription factor TCP4
SwissprotO822773e-53TCP10_ARATH; Transcription factor TCP10
SwissprotQ8LPR55e-53TCP4_ARATH; Transcription factor TCP4
TrEMBLM1AJX30.0M1AJX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000243280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-54TCP family protein