PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01459.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 382aa    MW: 42225.5 Da    PI: 4.6839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01459.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19112161255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Sme2.5_01459.1_g00005.1 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARRIRG 161
                              69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-37112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-32112171IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22112171IPR016177DNA-binding domain
CDDcd000188.42E-33112170No hitNo description
PROSITE profilePS5103224.131112169IPR001471AP2/ERF domain
PRINTSPR003671.1E-11113124IPR001471AP2/ERF domain
PfamPF008473.0E-11113159IPR001471AP2/ERF domain
PRINTSPR003671.1E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCGGSIISDY IDPSRTSRRL TAELLWGRLD LIKKQKNPSN YHSKHLRSDA IDDFEADFQD  60
FKELSDDEDV EVDVKPFAFS ASKQSTGSKS VKTVDSNKDT ADRSSKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDIEARRIR GKKAKVNFPD ETPAPASRHT  180
VKVDPQKALP KESLDSFQSV SAIMNSLEGG SYDSLGVFDE KPMTKQYGYE SGSSASADTG  240
LGSFIPSAGG DINFSSDVGS NSFERSDFGW GEPCSRTPEI SSVLSAAVES NEAQFVEDTN  300
LQEKLKSCTN NPVANDGNTV NVLSEDLSAF EPQMNFFQLP YIEGNWDASL DSFLNTSATQ  360
NGENAMDLWS FDDVPSLMGG VF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-201111711374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131790.0BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342909.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
TrEMBLA0A0V0IEL30.0A0A0V0IEL3_SOLCH; Putative ethylene-responsive transcription factor RAP2-12-like
STRINGPGSC0003DMT4000236090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-68related to AP2 12