PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01453.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 742aa    MW: 85267.4 Da    PI: 6.4709
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01453.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.91.3e-3174165291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                              fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++gkw+v+++++eH
  Sme2.5_01453.1_g00001.1  74 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEH 159
                              9***************************************998888545677889******************************* PP

                     FAR1  86 nHelap 91 
                              nHel+p
  Sme2.5_01453.1_g00001.1 160 NHELVP 165
                              ****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-3074165IPR004330FAR1 DNA binding domain
PfamPF105511.7E-31286378IPR018289MULE transposase domain
PfamPF044344.9E-12554600IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.263566602IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MDNEVIEFDI GLGGGGGSED GDGDDVLDEE NVANRSPVID GNVASVRSYS PQGDLDLEPY  60
DGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT  120
KDREIKRPRT ITRVGCKAAL SVKIQDSGKW VVSNFVKEHN HELVPPDQVH CLRSHRQISG  180
PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL  240
DYLKQMNCQN PEFFYAVQGD DDQCTGNVFW ADSKARANYK YFGDTVTFDT TYRSNRYRLP  300
FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQLPLSMTT DHDAVIRSAI  360
MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FESCWLSLVD  420
KYELRDLDWL QAIYLDRRQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF  480
KLYEKAVESR TEKEVKADYD TMNTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF  540
MANKVEDDGL VTTYQVAKFG DDHRAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV  600
TNVLTLPSHY ILKRWSRSAK STVALEDRVA DMINYYLESH TVRYNMLRHE AFKFVEEGAE  660
TVDSYTVAMA ALEEASKKVS LAVKHDGRMS LLNGHCRENL TRNGVRANYN IEDEQRNLSC  720
PFSEFNYLWD FTGSIVVVVC TV
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767791.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q7EV480.0A0A3Q7EV48_SOLLC; Uncharacterized protein
STRINGSolyc01g112320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]