PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01420.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 408aa    MW: 45075.8 Da    PI: 5.6025
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01420.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73.1e-24252299155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr+rWtpe He Fveav       kAtPk +l+lm+v+gLt++hvkSHLQkYR+
  Sme2.5_01420.1_g00008.1 252 KPRMRWTPEVHEVFVEAV-------KATPKGVLKLMNVEGLTIYHVKSHLQKYRT 299
                              79***************9.......69***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-14250299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-23251301IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-17252299IPR006447Myb domain, plants
PfamPF143791.0E-22330375IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNMRRALCIQ RSCEAQHSKM GVCGAMSTSL SILPSLEEKY LKLPDSLDML TEKEQTTNLM  60
SSRAIPSAST SGTVGHLLSS SCGPHEDFHF CPTSSQENRP CNYPFISSKA SAATCQSSLS  120
SIHSTSLDNY PMENSNDSWG KDAYHDSIDF STNVPVQNDQ VESLAVETAD DQVKSSDWQD  180
WADQLINDDG VLDSSWSDIL VDIKPPETKF LGASEVLAFQ SDTLPPPLPA VGASSGQSCP  240
VGSPLSTTAL AKPRMRWTPE VHEVFVEAVK ATPKGVLKLM NVEGLTIYHV KSHLQKYRTA  300
RYKPEPSEGT PEKKMTSVTE MPSLDLKMTM GITEALRMQM EVQKQLHEQL EIQRKLQLRI  360
EEQGIYLEMM FEKTKGIGKD LKVSSSSRTD EHPSPSNKTK HSSPNDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-23251303160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2383420.0AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345808.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLM1C5M10.0M1C5M1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000603240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45822139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.23e-78G2-like family protein