PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01376.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 135aa    MW: 15706.8 Da    PI: 10.4537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01376.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.7e-09348346
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                             +WT+   +++ +a +++  +   +W+ Iar++g g+++ +++ ++  
  Sme2.5_01376.1_g00015.1  3 SWTARQNKKFEEALALYDRDtpdRWHNIARCVG-GKSAAEVRRHYEV 48
                             6*****************99*************.**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.333154IPR017884SANT domain
SMARTSM007177.3E-7152IPR001005SANT/Myb domain
SuperFamilySSF466894.61E-13357IPR009057Homeodomain-like
PfamPF002496.3E-7347IPR001005SANT/Myb domain
CDDcd001672.17E-7350No hitNo description
Gene3DG3DSA:1.10.10.602.9E-5356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MASWTARQNK KFEEALALYD RDTPDRWHNI ARCVGGKSAA EVRRHYEVLV KDIMQIENGQ  60
VPLPNYKATA ESNGRGYANE KRRELQQPEN ANYRNGEKIP NFVKQRNARE LKKGKMEMRG  120
IDPRTSRMLS ERSTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-274701177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4578112e-79CU457811.8 S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence.
GenBankCU4682392e-79CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence.
GenBankHG9755162e-79HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238608.13e-51protein RADIALIS-like 6
SwissprotQ1A1735e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3Q7G7H26e-50A0A3Q7G7H2_SOLLC; Uncharacterized protein
STRINGSolyc04g080500.2.11e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-35RAD-like 6