PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01347.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 300aa    MW: 32611.7 Da    PI: 5.1325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01347.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10149193554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  Sme2.5_01347.1_g00008.1 149 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 193
                              99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-16142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-11142198No hitNo description
PROSITE profilePS5088816.323144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-16146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANNPPEGYA AGDFLDQILA IPSYASLLVT DISAGASSET TSLNSASGIS QLQQQPLFPL  60
GLSLDNGFAD TNNTGGFPVK TESEAMNMGN LYPGLEHLQS HAVWQSVPQV HQVQPFQSHP  120
TSSTTVTIPH QPAIRPRVRA RRGQATDPHS IAERLRRERI SERIKALQEL VPSCNKTDRA  180
AMLDEILDYV KFLRLQVKVL SMSRLGGASA VAHLVADIPS QSVEGDSCES QSNQHIWEKW  240
SDAETEQAVA KLMEEDVGTA MQYLQSKSLC IMPVSLAALI YPTQQTDAQS VVKPEPTAPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132310.0BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356051.20.0PREDICTED: transcription factor UNE12-like
RefseqXP_015168141.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227684e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLM1B1D00.0M1B1D0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000348400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]