PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01286.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 298aa    MW: 33023.7 Da    PI: 8.8308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01286.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-1184127855
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               Er RR++++s fe+L  llP++      K +K++i+  Av +I+ Lq
  Sme2.5_01286.1_g00009.1  84 TERERRKKMRSLFENLHGLLPQL----PAKADKSTIVDAAVTHIRALQ 127
                              6*********************6....39******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.95176126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1378138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1281144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-1181128No hitNo description
PfamPF000101.9E-884127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-484132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.39E-4223265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSGVAENIHN MSWESIFNLN DQLLRSKEKF EGDKLPDSNR SDTCPPLTTV QATRDAGKKI  60
MTSPDPKKGG NKSGAKEHEI HIWTERERRK KMRSLFENLH GLLPQLPAKA DKSTIVDAAV  120
THIRALQHTF NNLQNQKIER LQLGMMRLST MMTTQKYPSV GTSWEQFLAD QGSTSNSAAI  180
TPTNNNNMSA TPLLMNNNNV PTFFESWCSP NVTINVCGAV AHISVCCPKK PGLFTLICFV  240
LEKHNIEVVS AQIQSDPVRT MFMIQAQAKG RGGLAQGFSV GEMYKQVASE ILSITTSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163699.11e-109PREDICTED: transcription factor bHLH95-like
TrEMBLM1CF931e-108M1CF93_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000662571e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-47bHLH family protein