PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01232.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 394aa    MW: 43645 Da    PI: 7.0073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01232.1_g00025.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.64e-07296338754
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++ rrRR++i +++  L++l+P       + ++ a++L +A +Y+k L
  Sme2.5_01232.1_g00025.1 296 AAARRRREKISERIRILQKLVPGG-----TYMDTASMLDEAANYLKFL 338
                              567*******************96.....68***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.183289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12294349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-11295347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-9295342No hitNo description
SMARTSM003533.1E-11295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4297338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MNLQEFGSAF DPIDIVSSWK ISQRQEAATK LAADSVAAKS GTGSIGNGTK SKIGSSSSSS  60
SSFPPQNNYM PYFGNNQVPV CGLMADLNYI GLSSKTKSPD CLLSTTNTSD TDSSVELDGA  120
ILSEDSRSFW NVNANNAVSS GESPIDVLKS KPIYANGNNN VHYSVNELDQ TVSYNNLITS  180
SEAKRYNIDK RSHNDLLQSD FSNRDYGFQL ILENDQPMSK KSRSDYKLPS SSNINFQQAC  240
SSECSIVEPN SEAIAQMKEM IYCAAAFRPV NSVMEEVMVE KPKRKNVRIS MDPQTAAARR  300
RREKISERIR ILQKLVPGGT YMDTASMLDE AANYLKFLRT QVNTLEAFGF KIDPIIINNN  360
SFTTISSIPL INYPFPMQPH FPLQNFNPIH HPKC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282301KRKNVRISMDPQTAAARRRR
2298303RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357366.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLM1A1A70.0M1A1A7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000124870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-50bHLH family protein