PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01191.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 243aa    MW: 25553.5 Da    PI: 8.4977
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01191.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-382382362
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              ++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rkn k+s
  Sme2.5_01191.1_g00008.1 23 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGSRKNAKRS 82
                             57899***************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.4E-332580IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-262580IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1062680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPSDVSERRA AKQQQGGAPA PEPEHLPCPR CDSTNTKFCY YNNYNFSQPR HFCKACRRYW  60
THGGTLRDIP IGGGSRKNAK RSRTITTNSI NSTSCLSSTL SPREYHHAPN PSHVSPFLVP  120
LAADHGGSLP FDVKPGVNMC GSFTSLLSSA QGPAGLLALG GFGLGVGSGI EDMGFGLGRP  180
IWQFPGVSHT NADSNNNSNG AGANMLGTTW QLATGGEGGF VGAGGEIFNF PDLAISTHGN  240
GMK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338240.11e-139PREDICTED: dof zinc finger protein DOF3.4
TrEMBLM1AMQ11e-139M1AMQ1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000261371e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45322241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.17e-40OBF binding protein 1