PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01171.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 443aa    MW: 51523.1 Da    PI: 8.9564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01171.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1364110354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN+ + +Lr+llP+      +K +Ka+ L ++++++k+L
  Sme2.5_01171.1_g00003.1  64 KSHSEAERRRRERINNHLTKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 110
                              79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.07961110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-464113No hitNo description
PfamPF000104.3E-1164110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1665133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1565131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1367116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
ProDomPD0055412.0E-15379424IPR000289Ribosomal protein S28e
HamapMF_0029219.65379443IPR000289Ribosomal protein S28e
Gene3DG3DSA:2.40.50.1402.4E-31379442IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502491.46E-21382442IPR012340Nucleic acid-binding, OB-fold
PfamPF012002.6E-28383442IPR000289Ribosomal protein S28e
CDDcd044574.60E-30384442No hitNo description
PROSITE patternPS009610434442IPR028626Ribosomal protein S28e conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MYGSANRSSI LPWNTFGDHP FIFHGQSHYG DLFNKIRPQF PCKEVHKMMS DQEIMDAKAL  60
AASKSHSEAE RRRRERINNH LTKLRSLLPN TTKTDKASLL AEVIQHVKEL KRQTSQIAQT  120
NELIPTEINE LTVDYCNDNE DQGNFMIKAS LCCEDRSDLL PDLINTLKSL RLKTLKAEIT  180
TLGGRVRNVL YITKDQREDN TWINDGDNDN DDDQMQYCLT SIQVALKEVM EKSSGNDSVY  240
SGGGFMVYAI ADDIVLINET RAKINVRLEV WRHTLESKWF KLSRTKTEYL ECKFSMERDE  300
PIVMSDKINN ETIREKLGVA PMADKMRKIK LRWFIHVQRR RTDAPVWRCE RLDLELHEGV  360
EMRDSWKKPL YLYEVMVRMK SVTKHAIVIK IMGHTGSRGQ VTQMRVKFLD NQNRFIMRNV  420
KGPVREGDVL TLLESEREAR RLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bc2e-2837944216440S ribosomal protein S28E
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-131HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237007.11e-125transcription factor bHLH30-like
TrEMBLM1ABV21e-124M1ABV2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000192941e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-64bHLH family protein