PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01135.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 241aa    MW: 27909 Da    PI: 8.9558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01135.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-0682127454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h + Er RR++ ++++ +L +llP       +K++K +i++ A + I +L
  Sme2.5_01135.1_g00009.1  82 KHMIQERIRREKQKQSYLNLHKLLPMG-----TKNEKNAIVQTAARRIEEL 127
                              6899*********************97.....7***********9999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-974142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.18E-576129No hitNo description
PROSITE profilePS5088810.43678127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-582150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEEFFEISWF RDDEVTNDNN FVVNQNAFVS FGSKPNEGFG VFGCGNVSTN HQNMNKRVME  60
FLKTTWSLKH GQGKIEREKV HKHMIQERIR REKQKQSYLN LHKLLPMGTK NEKNAIVQTA  120
ARRIEELVQY KDNLKKMNDE LQMILAQSDQ KKEEFDKTKI EAKVSYPICG VDSMLEVLKC  180
LKNCGTKVNS IQSSFSCQEF STIIEIETKG RVLGEIKFLR IMYDHLPPVF LRSTSTPLSS  240
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352118.11e-119PREDICTED: transcription factor bHLH92
TrEMBLK4CVW21e-109K4CVW2_SOLLC; Uncharacterized protein
STRINGSolyc09g083360.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-36bHLH family protein