PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01098.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 385aa    MW: 42369.6 Da    PI: 4.4632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01098.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18116165255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+G+r ++ +g+W+AeIrdp     +  r+++g+f taeeAa+a++a +++++g
  Sme2.5_01098.1_g00004.1 116 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWIGTFNTAEEAARAYDAEARRIRG 165
                              69*******.**********94....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-33116179IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21116175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-31116175IPR001471AP2/ERF domain
CDDcd000182.90E-31116174No hitNo description
PROSITE profilePS5103223.736116173IPR001471AP2/ERF domain
PRINTSPR003673.5E-11117128IPR001471AP2/ERF domain
PfamPF008471.7E-11117165IPR001471AP2/ERF domain
PRINTSPR003673.5E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISGW IPPPRSSQRL TADLLWDCSD LENKKKKKKK NASNYHSKPL RSEVVDFEAD  60
FQDFKDEEEE DYSLDINTFA FSASELSGTS AGSKSLNSVD SNKEVEKSSK RQRKNQYRGI  120
RKRPWGKWAA EIRDPQKGVR VWIGTFNTAE EAARAYDAEA RRIRGNKAKV NFPDEAPIPA  180
SKQAGKVNPR KVLSDESSNP VLSNTMFMNN LNDGCCDNLG FFEEKTTTLY GYEALCATPV  240
NTGPSSYAAP ATAGVYFNSD QGSNSFDPSD FVWGETCSRT PDISSVLSAA IECDEGQFVE  300
GADPEEKLKS CSNNLVPDDG NTSHRPPEEF SAFESEVKLF QTPYSEGNLD LSVDAFLNAD  360
ATQGGENAMD LWSFDELSSI MGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21116173260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339KKKKKKK
2109123KRQRKNQYRGIRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134350.0BT013435.1 Lycopersicon esculentum clone 132076R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362095.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_006362096.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLM1CTE30.0M1CTE3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000742480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.36e-58related to AP2 12